All work performed in the Genomics Facility should be acknowledged in presentations, reports, posters, papers and all other publications.Please acknowledge Genomics Facility as: Genomics Facility, IMBB FORTH, Heraklion, Crete, Greece.
If a staff member has offered significant intellectual contribution please consider co-authorship.
2024
Setdb1 safeguards proper differentiation of adult intestinal stem cells by controlling chromatin accessibility and transcriptome variability, Ioanna Peraki, Ioannis K. Deligiannis, Dimitris Botskaris, Marianna Stagaki, Haroula Kontaki, Elena Deligianni, Giannis Giannoulakis, Matthieu D. Lavigne, Celia P. Martinez-Jimenez, Iannis Talianidis, BioRxiv, 2024.10.18.619079; doi: https://doi.org/10.1101/2024.10.18.619079
scRNA-Explorer: An End-user Online Tool for Single Cell RNA-seq Data Analysis Featuring Gene Correlation and Data Filtering, Baltsavia I, Oulas A, Theodosiou T, Lavigne MD, Andreakos E, Mavrothalassitis G, Iliopoulos I. J Mol Biol., 2024 Sep 1;436(17):168654. doi: 10.1016/j.jmb.2024.168654. Epub 2024 Jun 12
Cockayne syndrome B protein is implicated in transcription and associated chromatin dynamics in homeostatic and genotoxic conditions, Liakos A, Ntakou-Zamplara KZ, Angelova N, Konstantopoulos D, Synacheri AC, Spyropoulou Z, Tsarmaklis IA, Korrou-Karava D, Nikolopoulos G, Lavigne MD, Fousteri M., Aging Cell., 2025 Jan;24(1):e14341. doi: 10.1111/acel.14341. Epub 2024 Oct 6.
2023
Enhanced frequency of transcription pre-initiation complexes assembly after exposure to UV irradiation results in increased repair activity and reduced probabilities for mutagenesis. Liakos A, Synacheri AC, Konstantopoulos D, Stefos GC, Lavigne MD, Fousteri M. Nucleic Acids Res.2023 Sep 8;51(16):8575-8586. doi: 10.1093/nar/gkad593. PMID: 37470822
2022
Histone H2Bub dynamics in the 5' region of active genes are tightly linked to the UV-induced transcriptional response, Fanourgakis S, SynacheriAC, Lavigne MD, Konstantopoulos D, Fousteri M. Comput Struct Biotechnol J. 2022 Dec 13;21:614-629. doi: 10.1016/j.csbj.2022.12.013. eCollection 2023.