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Pioneering Research to Unlock Secrets of Nature's Energy Efficiency: Diatoms in the Spotlight
Efstathiou G, Antonakis AN, Pavlopoulos GA, Theodosiou T, Divanach P, Trudgian DC, Thomas B, Papanikolaou N, Aivaliotis M, Acuto O, Iliopoulos I. (2017) ProteoSign: an end-user online differential proteomics statistical analysis platform Nucleic Acids Res. 2017 May 17. doi: 10.1093/nar/gkx444.
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Chatzinikolaou G, Apostolou Z, Aid-Pavlidis T, Ioannidou A, Karakasilioti I, Papadopoulos GL, Aivaliotis M, Tsekrekou M, Strouboulis J, Kosteas T, Garinis GA. (2017) ERCC1-XPF cooperates with CTCF and cohesin to facilitate the developmental silencing of imprinted genes Nat Cell Biol. 2017 May;19(5):421-432. doi: 10.1038/ncb3499.
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Fadouloglou VE, Balomenou S, Aivaliotis M, Kotsifaki D, Arnaouteli S, Tomatsidou A, Efstathiou G, Kountourakis N, Miliara S, Griniezaki M, Tsalafouta A, Pergantis SA, Boneca IG, Glykos NM, Bouriotis V, Kokkinidis M. (2017) Unusual α-Carbon Hydroxylation of Proline Promotes Active-Site Maturation J Am Chem Soc. 2017 Apr 19;139(15):5330-5337. doi: 10.1021/jacs.6b12209.
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Psatha K, Kollipara L, Voutyraki C, Divanach P, Sickmann A, Rassidakis GZ, Drakos E, Aivaliotis M. (2017) Deciphering lymphoma pathogenesis via state-of-the-art mass spectrometry-based quantitative proteomics J Chromatogr B Analyt Technol Biomed Life Sci. 2017 Mar 15;1047:2-14. doi: 10.1016/j.jchromb.2016.11.005.
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Kalyvianaki K, Gebhart V, Peroulis N, Panagiotopoulou C, Kiagiadaki F, Pediaditakis I, Aivaliotis M, Moustou E, Tzardi M, Notas G, Castanas E, Kampa M. (2017) Antagonizing effects of membrane-acting androgens on the eicosanoid receptor OXER1 in prostate cancer Sci Rep. 2017 Mar 14;7:44418. doi: 10.1038/srep44418.
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Vasilikogiannaki E., Louka A., Stratakis M. (2016) Gold-Nanoparticle-Catalyzed Silaboration of Oxetanes and Unactivated Epoxides Organometallics, 35 (23), pp 3895–3902
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Kotzabasaki V., Vassilikogiannakis G., Stratakis M. (2016) Regiocontrolled Synthesis of γ-Hydroxybutenolides via Singlet Oxygen-Mediated Oxidation of 2-Thiophenyl Furans J. Org. Chem., 81 (10), pp 4406–4411
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Papanastasiou M, Sardis MF Orfanoudaki G, Giapitzaki J., Aivaliotis, M., Karamanou, S. and Economou, A. (2010) Comprehensive Characterization of the E. coli Cell Envelope Using a nanoLC-LTQ Orbitrap MS 1st International Proteomics Conference on Crete- IPCC01 (October 7-8, 2010)
Papanastasiou M, Orfanoudaki G, Kountourakis N, Koukaki M, Sardis MF, Aivaliotis M, Tsolis KC, Karamanou S, Economou A. (2016) Rapid label‐free quantitative analysis of the E. coli BL21 (DE3) inner membrane proteome Proteomics16(1):85-97
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Tzenaki N, Aivaliotis M, Papakonstanti EA. (2015) Focal adhesion kinase phosphorylates the phosphatase and tensin homolog deleted on chromosome 10 under the control of p110δ phosphoinositide-3 kinase FASEB J. 29(12):4840-52
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Gessmann R, Brückner H, Aivaliotis M, Petratos K. (2015) The crystal structure of Z-Gly-Aib-Gly-Aib-OtBu J Pept Sci. 21(6):476-9. doi: 10.1002/psc.2764
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Palikaras K, Lionaki E, Tavernarakis N. (2015) Coordination of mitophagy and mitochondrial biogenesis during ageing in Caenorhabditis elegans. Nature, 521: 525-528
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Tsolis K, Bei E, Papathanasiou I, Kostopoulou F, Gkretsi V, Kalantzaki K, Malizos K, Zervakis M, Tsezou A, Economou A (2015) Comparative proteomic analysis of hypertrophic chondrocytes in osteoarthritis Clinical Proteomics doi:10.1186/s12014-015-9085-6
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Titilas I., Kidonakis M., Gryparis C., Stratakis M. (2015) Tandem Si−Si and Si−H Activation of 1,1,2,2-Tetramethyldisilane by Gold Nanoparticles in Its Reaction with Alkynes: Synthesis of Substituted 1,4-Disila-2,5-cyclohexadienes Organometallics, 34, 1597−1600
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Stratigi K, Kapsetaki M, Aivaliotis M, Town T, Flavell RA, Spilianakis CG. (2015) Spatial proximity of homologous alleles and long noncoding RNAs regulate a switch in allelic gene expression Proc Natl Acad Sci U S A.112(13):E1577-86.
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Gazi AD, Charova S, Aivaliotis M, Panopoulos NJ, Kokkinidis M. (2015) HrpG and HrpV proteins from the Type III secretion system of Erwinia amylovora form a stable heterodimer FEMS Microbiology Letters 362(1):1-8
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Bakela K, Kountourakis N, Aivaliotis M, Athanassakis I. (2015) Soluble MHC-II proteins promote suppressive activity in CD4+ T-cells Immunology144(1):158-69
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Orfanoudaki G, Economou A (2014) Proteome-wide Sub-cellular Topologies of E.coli polypeptides database (STEPdb) Mol Cell Proteomics 13(12):3674-87
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Bakela K, Kountourakis N, Aivaliotis M, Athanassakis I. (2014) Soluble MHC class II antigens as potent regulators of the immune response 16th Biennial Meeting of the European Society for Immunodeficiencies (ESID) (29 October - 1 November 2014)
Fadouloglou VE, Tsalafouta A, Arnaouteli S, Balomenou S, Kountourakis N, Aivaliotis M, Bouriotis V, Glykos NM, Kokkinidis, M (2014) Hydroxyproline residues positioned at the active sites of two deacetylases of the CE4 family Current Trends in Structural Biology & 7th International Conference of the Hellenic Crystallographic Association (19-21 September)
Sarrou I, Aivaliotis M, Charova S, Kokkinidis M (2014) Study of the structural conformation of the HrcQ complex of P. syringae Current Trends in Structural Biology & 7th International Conference of the Hellenic Crystallographic Association (19-21 September)
Vasilikogiannaki E.,Titilas I., Gryparis C., Louka A., Lykakis I.N., Stratakis M. (2014) Efficient hydrosilylation of carbonyl compounds by 1,1,3,3-tetramethyldisiloxane catalyzed by Au/TiO2 Tetrahedron, 70, 6106-6113
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Gryparis C., Stratakis M. (2014) Nanogold-Catalyzed cis-Silaboration of Alkynes with Abnormal Regioselectivity Org. Lett., 16, 1430−1433
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Papanastasiou M, Trelle MB, Tsirigotaki A, Karamanou S, Jorgensen TJD, Economou A. (2014) Investigation of the dynamics of the translocase motor SecA by hydrogen deuterium-exchange mass spectrometry ASMS 2014 Conference on Mass Spectrometry and Allied Topics
Tsirigotaki A., Papanastasiou M, Konijnenberg A, Chatzi K, Trelle MB, Jørgensen TJD, Sobott F, Karamanou S, Economou A. (2014) The non-native code of secreted preproteins investigated by HDX-MS and Native IM/MS ASMS 2014 Conference on Mass Spectrometry and Allied Topics
Velegraki G., Stratakis M. (2013) Aryl-Substituted Cyclopropyl Acetylenes as Sensitive Mechanistic Probes in the Gold-Catalyzed Hydration of Alkynes. Comparison to the Ag(I) , Hg(II) , and Fe(III)-Catalyzed Processes J. Org. Chem. , 78, 8880−8884
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Tzerpos P, Savvidis T, Aivaliotis M, Benos P, Spilianakis C. (2013) Bioinformatic and proteomic analysis of transcription factor binding sites in interacting regulatory elements in mouse T cells FEBS Journal, Special Issue: 38th FEBS Congress, Saint Petersburg, Russia, (July 6-11, 2013, 280, s1, 1-661)
Papanastasiou M, Orfanoudaki G, Koukaki M, Kountourakis N, Sardis MF, Aivaliotis M, Karamanou S. and Economou A. (2013) The Escherichia coli Peripheral Inner Membrane Proteome Molecular and Cellular Proteomics 12: 599-610
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Kotzabasaki V., Lykakis I.N.,Gryparis C., Psyllaki A., Vasilikogiannaki E., Stratakis M. (2013) Gold-Catalyzed Dehydrogenative Cycloaddition of Tethered 1,n Dihydrodisilanes to Alkyne Organometallics, 32, 665−672
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Schlesner M, Miller A, Besir H, Aivaliotis M, Streif J, Scheffer B, Siedler F, Oesterhelt D (2012) The Protein Interaction Network of a Taxis Signal Transduction System in a Halophilic Archaeon Proteomics BMC Microbiology 12: 272
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Papanastasiou M, Trelle MB, Gouridis G, Karamanou S, Famelis N, Jorgensen TJD, Economou A. (2012) Unraveling the Translocon Machinery at Work by Hydrogen-Deuterium Exchange Mass Spectrometry 60th ASMS Conference on Mass Spectrometry and Allied Topics (May 20-24, 2012)
Aivaliotis M, Portaliou A, Balabanidou V, Kountourakis N, Chronaki D, Orfanoudaki G, Karamanou S, Economou A. (2012) Determination of Complexes formed during protein secretion through Type III secretion system in Enteropathogenic E. coli
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Bariotaki A, Kalaitzakis D, Smonou I. (2012) Enzymatic Reductions for the Regio- and Stereoselective Synthesis of Hydroxyketo Esters and Dihydroxy Esters. Organic Letters : DOI 10.1021
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Famelis N, Gouridis G, Karamanou S, Martin S, Papanastasiou M, Trelle MB, Kapelios E, Aivaliotis M, Pergantis S, Capitani G, Jorgensen TJD. Economou A. (2012) Structure and dynamics of chaperone-preprotein recognition in the secretory pathway
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Zerefos PG, Aivaliotis M, Baumann M, Vlahou A (2012) Analysis of the urine proteome via a combination of multi-dimensional approaches Proteomics 12: 391-400
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Aivaliotis M., Portaliou A, Balabanidou V, Kountourakis N, Chronaki D, Orfanoudaki G, Karamanou S, Economou A. (2012) Dynamic complexome and secretome analysis for the study of type III protein translocation and secretion mechanism
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Aivaliotis M, Portaliou A, Balabanidou V, Kountourakis N, Orfanoudaki G, Karamanou S, Economou A. (2011) Dissecting Type III Protein Secretion Mechanism in Enteropathogenic Escherichia coli by Dynamic Complexome and Secretome Analysis EMBO practical workshop on Protein-Protein and Protein-Nucleic Acid Cross-linking and Mass Spectrometry (October 23-29, 2011)
Stratigi C, Aivaliotis M, Spilianakis C. (2011) Homologous Association in the TNF- α Locus International workshop on Functional and Structural Proteomics, Athens 2011 (FunSPA, October 6-7, 2011)
Portaliou A, Aivaliotis M, Kountourakis N, Balabanidou V, Karamanou S, Economou A. (2011) Global analysis of the Type III protein secretion system of enteropathogenic Escherichia coli International workshop on Functional and Structural Proteomics, Athens 2011 (FunSPA, October 6-7, 2011)
Papanastasiou M, Orfanoudaki G, Sardis MF, Aivaliotis M, Karamanou S, Economou A. (2011) Comprehensive Characterization of the Cell Envelope Proteome of Escherichia coli International workshop on Functional and Structural Proteomics, Athens 2011 (FunSPA, October 6-7, 2011)
Aivaliotis M, Portaliou A, Balabanidou V, Orfanoudaki G, Kountourakis N, Karamanou S, Economou A. (2011) Elucidating Type III Protein Secretion Mechanism in Enteropathogenic Escherichia coli by Dynamic Complexome Analysis International workshop on Functional and Structural Proteomics, Athens 2011 (FunSPA, October 6-7, 2011)
Kamileri I., Karakasilioti I., Sideri A., Kosteas T., Tatarakis A., Talianidis I., Garinis, G. A. (2012) Defective transcription initiation causes postnatal growth failure in a mouse model of nucleotide excision repair (NER) progeria PNAS doi: 10.1073/pnas.1114941109
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Lykakis, I.N., Psyllaki, A., Stratakis, M. (2011) Oxidative Cycloaddition of 1,1,3,3-Tetramethyldisiloxane to Alkynes Catalyzed by Supported Gold Nanoparticles Journal of the American Chemical Society 133:10426–10429
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Gryparis C., Lykakis I.N., Efe C., Zaravinos I.P., Vidali T., Kladoua E., Stratakis M (2011) Functionalized 3(2H)-furanones via photooxygenation of (b-keto)-2-substituted furans: Application to the biomimetic synthesis of merrekentrone C Organic and Biomolecular Chemistry 9:5655–5658
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Papanastasiou M, Orfanoudaki G, Sardis MF, Mavroudis P, Aivaliotis M, Karamanou S,Economou A. (2011) Deciphering the Cell Envelope Proteome of Escherichia coli 59th ASMS Conference on Mass Spectrometry (June 5-9, 2011)
Kapellios EA, Karamanou S, Sardis MF, Papanastasiou M, Aivaliotis M, Pergantis SA, Economou A. (2011) A Multiplexed Approach for the Determination of Intact Protein Mass, Dimension and Oligomerization Using Nanoelectrospray Ion Mobility Spectrometry (GEMMA), LTQ-Orbitrap MS, MALLS and QELS 59th ASMS Conference on Mass Spectrometry (June 5-9, 2011)
Aivaliotis M, Portaliou A, Balabanidou V, Karamanou S, Economou A. (2011) Complexome dynamics during Type III protein secretion. Omics Meets Cell Biology, Keystone Symposia on Molecular and Cellular Biology (May 8-13, 2011)
Aivaliotis M, Portaliou A, Balabanidou V, Kountourakis N, Karamanou S, Economou A. (2011) Complexome dynamics during Type III protein secretion Summer school on Computational Mass Spectrometry Based Proteomics, Max Planck Institute Munich (May 22-27, 2011)
Lykakis I.N., Efe C., Gryparis C., Stratakis M. (2011) Ph3PAuNTf2 as a Superior Catalyst for the Selective Synthesis of 2H-Chromenes: Application to the Concise Synthesis of Benzopyran Natural Products European Journal of Organic Chemistry 2334–2338
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Kapellios EA, Karamanou S, Sardis MF, Aivaliotis M, Economou A, Pergantis SA. (2011) Using Nanoelectrospray Ion Mobility Spectrometry (GEMMA) to Determine the Size and Relative Molecular Mass of Proteins and Protein Assemblies: A Comparison with MALLS and QELS Analytical and Bioanalytical Chemistry 399: 2421-33
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Aivaliotis M, Portaliou A, Balabanidou V, Karamanou S, Economou A. (2011) Complexome dynamics during type III protein secretion by Enteropathogenic Escherichia coli. 44th Annual Meeting of the German Society for Mass Spectrometry (DGMS, February 27 – March 2, 2011)
Mylona EA, Savelonas MA, Maroulis D, Aivaliotis M. () 2D-GE Image Segmentation based on Level-Sets IEEE International Conference on Image Processing (ICIP), Brussesls, Belgium
Lionaki E, Aivaliotis M, Pozidis C, Tokatlidis K. (2010) The N-terminal shuttle domain of Erv1 determines the affinity for Mia40 and mediates electron transfer to the catalytic Erv1 core in yeast mitochondria Antioxid Redox Signal. 13(9):1327-39
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Tzerpos P, Savvidis T, Aivaliotis M, Spilianakis C. (2010) Affinity Capture and Mass Spectrometric Identification of Specific DNA Binding Proteins 1st International Proteomics Conference on Crete- IPCC01 (October 7-8, 2010)
Balabanidou V, Portaliou A, Karamanou S, Aivaliotis M, Economou A. (2010) Chaperone/Secreted protein native complexes mediate protein export 1st International Proteomics Conference on Crete- IPCC01 (October 7-8, 2010)
Kallergi E, Kritsiligou P, Lionaki E, Aivaliotis M, Katrakili N, Pozidis C, Tokatlidis K. (2010) Function and molecular interactions of mitochondrial sulfhydryl oxidase Erv1 1st International Proteomics Conference on Crete- IPCC01 (October 7-8, 2010)
Kallergi E, Kritsiligou P, Lionaki E, Aivaliotis M, Katrakili N., Pozidis C, Tokatlidis K. (2010) Function and molecular interactions of mitochondrial sulfhydryl oxidase Erv1 1st International Proteomics Conference on Crete- IPCC01 (October 7-8, 2010)
Kapellios EA, Karamanou S, Sardis MF, Aivaliotis M, Economou A. and Pergantis S. A. (2010) Using Nanoelectrospray Ion Mobility Spectrometry (GEMMA) to Determine the Size and Relative Molecular Mass of Proteins and Protein Assemblies: A Comparison with MALLS and QELS. 1st International Proteomics Conference on Crete- IPCC01 (October 7-8, 2010)
Aivaliotis M, Papanastasiou M, Economou, A. (2010) Study of non-covalent protein complexes using a Top-Down approach on a hybrid LTQ-Orbitrap mass spectrometer 1st International Proteomics Conference on Crete- IPCC01 (October 7-8, 2010)
Aivaliotis M, Balabanidou V, Portaliou A, Kountourakis N., Karamanou S, Economou A. (2010) Global and targeted complexome analysis of the cytosolic proteome of Enteropathogenic Escherichia coli using Native-PAGE combined with nLC-LTQ Orbitrap MS 1st International Proteomics Conference on Crete- IPCC01 (October 7-8, 2010)
Kalaitzakis D. and Smonou I. (2010) A two-step, one-pot enzymatic synthesis of 2-substituted-1,3-diols J. Org. Chem. 75:8658-8661
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Kouyianou K, Aivaliotis M, Gevaert K, Karas M, Tsiotis G. (2010) Membrane proteome of the green sulfur bacterium Chlorobium tepidum (syn. Chlorobaculum tepidum) analyzed by gel-based and gel-free methods Photosynth Res. 104: 153-62
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Papanastasiou M, Sardis MF, Aivaliotis M, Karamanou S, Economou A. (2010) Comprehensive Characterization of the Inner Membrane Proteome of Escherichia coli Using a nanoLC-LTQ Orbitrap MS 58th ASMS Conference on Mass Spectrometry and Allied Topics (May 23-27, 2010)
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Aivaliotis M, Papanastasiou M, Economou A. (2010) Study of non-covalent protein complexes using a top-down approach on a hybrid LTQ-Orbitrap mass spectrometer 58th ASMS Conference on Mass Spectrometry and Allied Topics (May 23-27, 2010)
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(2010) Global and targeted complexome analysis of the cytosolic proteome of Enteropathogenic Escherichia coli using Native-PAGE combined with nLC-LTQ Orbitrap MS 58th ASMS Conference on Mass Spectrometry and Allied Topics (May 23-27, 2010)
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Portaliou A, Kountourakis N, Aivaliotis M, Balabanidou V, Karamanou S, Economou A. (2010) Analysis of the secretome of enteropathogenic Escherichia coli. 4th Protein Biotechnology Summer School on Crete (May 26-27, 2010)
Mischak H, Kolch W, Aivaliotis M, Bouyssié D, Court M, Dihazi H, Dihazi GH, Franke J, Garin J, Gonzalez de Peredo A, Iphöfer A, Jänsch L, Lacroix C, Makridakis M, Masselon C, Metzger J, Monsarrat B, Mrug M, Norling M, Novak J, Pich A, Pitt A, Bongcam-Rudloff E, Siwy J, Suzuki H, Thongboonkerd V, Wang LS, Zoidakis J, Zürbig P, Schanstra JP, Vlahou A. (2010) Comprehensive human urine standards for comparability and standardization in clinical proteome analysis Proteomics Clinical applications 4: 464-478
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Samoilis G, Aivaliotis M, Vranakis I, Papadioti A, Tselentis Y, Tsiotis G, Psaroulaki A. (2010) Proteomic screening for possible effector molecules secreted by the obligate intracellular pathogen Coxiella burnetii J Proteome Res. 9: 1619-26
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Kalaitzakis D, and Smonou I. (2010) Highly diastereoselective synthesis of 2-substituted-1,3-diols catalyzed by Ketoreductases Tetrahedron 66:9431-9439
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Kapellios EA, Karamanou S, Sardis MF, Aivaliotis M, Pergantis SA, Economou A. (2009) Nanoelectrospray Differential Ion Mobility Spectrometry for Protein Sizing and Molecular Mass Determination: Method Development and Validation 18th International Mass Spectrometry Conference, Bremen, Germany (Aug 30-Sep 04, 2009)
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