2017

Efstathiou G, Antonakis AN, Pavlopoulos GA, Theodosiou T, Divanach P, Trudgian DC, Thomas B, Papanikolaou N, Aivaliotis M, Acuto O, Iliopoulos I. (2017) ProteoSign: an end-user online differential proteomics statistical analysis platform. *Nucleic Acids Res.* May 17. doi: 10.1093/nar/gkx444. [Abstract]

Chatzinikolaou G, Apostolou Z, Aid-Pavlidis T, Ioannidou A, Karakasilioti I, Papadopoulos GL, Aivaliotis M, Tsekrekou M, Strouboulis J, Kosteas T, Garinis GA. (2017) ERCC1-XPF cooperates with CTCF and cohesin to facilitate the developmental silencing of imprinted genes. *Nat Cell Biol.* May;19(5):421-432. doi: 10.1038/ncb3499. [Abstract]

Fadouloglou VE, Balomenou S, Aivaliotis M, Kotsifaki D, Arnaouteli S, Tomatsidou A, Efstathiou G, Kountourakis N, Miliara S, Griniezaki M, Tsalafouta A, Pergantis SA, Boneca IG, Glykos NM, Bouriotis V, Kokkinidis M. (2017) Unusual α-Carbon Hydroxylation of Proline Promotes Active-Site Maturation. *J Am Chem Soc.* Apr 19;139(15):5330-5337. doi: 10.1021/jacs.6b12209. [Abstract]

Psatha K, Kollipara L, Voutyraki C, Divanach P, Sickmann A, Rassidakis GZ, Drakos E, Aivaliotis M. (2017) Deciphering lymphoma pathogenesis via state-of-the-art mass spectrometry-based quantitative proteomics. *J Chromatogr B Analyt Technol Biomed Life Sci.* Mar 15;1047:2-14. doi: 10.1016/j.jchromb.2016.11.005. [Abstract]

Kalyvianaki K, Gebhart V, Peroulis N, Panagiotopoulou C, Kiagiadaki F, Pediaditakis I, Aivaliotis M, Moustou E, Tzardi M, Notas G, Castanas E, Kampa M. (2017) Antagonizing effects of membrane-acting androgens on the eicosanoid receptor OXER1 in prostate cancer. *Sci Rep.* Mar 14;7:44418. doi: 10.1038/srep44418. [Abstract]

2016

Papanastasiou M, Orfanoudaki G, Kountourakis N, Koukaki M, Sardis MF, Aivaliotis M, Tsolis KC, Karamanou S, Economou A. (2016) Rapid label-free quantitative analysis of the *E. coli* BL21 (DE3) inner membrane proteome. *Proteomics* 16(1):85-97. [Abstract]

2015

Tzenaki N, Aivaliotis M, Papakonstanti EA. (2015) Focal adhesion kinase phosphorylates the phosphatase and tensin homolog deleted on chromosome 10 under the control of p110δ phosphoinositide-3 kinase. *FASEB J.* 29(12):4840-52. [Abstract]

Gessmann R, Brückner H, Aivaliotis M, Petratos K. (2015) The crystal structure of Z-Gly-Aib-Gly-Aib-OtBu. *J Pept Sci.* 21(6):476-9. doi: 10.1002/psc.2764. [Abstract]

Tsolis K, Bei E, Papathanasiou I, Kostopoulou F, Gkretsi V, Kalantzaki K, Malizos K, Zervakis M, Tsezou A, Economou A. (2015) Comparative proteomic analysis of hypertrophic chondrocytes in osteoarthritis. *Clinical Proteomics.* doi:10.1186/s12014-015-9085-6. [Abstract]

Stratigi K, Kapsetaki M, Aivaliotis M, Town T, Flavell RA, Spilianakis CG. (2015) Spatial proximity of homologous alleles and long noncoding RNAs regulate a switch in allelic gene expression. *Proc Natl Acad Sci U S A.* 112(13):E1577-86. [Abstract]

Gazi AD, Charova S, Aivaliotis M, Panopoulos NJ, Kokkinidis M. (2015) HrpG and HrpV proteins from the Type III secretion system of *Erwinia amylovora* form a stable heterodimer. *FEMS Microbiology Letters.* 362(1):1-8. [Abstract]

Bakela K, Kountourakis N, Aivaliotis M, Athanassakis I. (2015) Soluble MHC-II proteins promote suppressive activity in CD4+ T-cells. *Immunology* 144(1):158-69. [Abstract]

2014

Orfanoudaki G, Economou A. (2014) Proteome-wide sub-cellular topologies of *E. coli* polypeptides database (STEPdb). *Mol Cell Proteomics.* 13(12):3674-87. [Abstract]

2013

Papanastasiou M, Orfanoudaki G, Koukaki M, Kountourakis N, Sardis MF, Aivaliotis M, Karamanou S, Economou A. (2013) The *Escherichia coli* peripheral inner membrane proteome. *Molecular and Cellular Proteomics.* 12: 599-610. [Abstract]

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